5TCS image
Deposition Date 2016-09-15
Release Date 2016-11-23
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5TCS
Keywords:
Title:
Crystal structure of a Dwarf Ndc80 Tetramer
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.83 Å
R-Value Free:
0.26
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Kinetochore protein NDC80
Gene (Uniprot):NDC80
Chain IDs:A
Chain Length:277
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Kinetochore protein NUF2
Gene (Uniprot):NUF2
Chain IDs:B
Chain Length:215
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Kinetochore protein SPC24
Gene (Uniprot):SPC24
Chain IDs:C
Chain Length:100
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Polymer Type:polypeptide(L)
Molecule:Kinetochore protein SPC25
Gene (Uniprot):SPC25
Chain IDs:D
Chain Length:115
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Ligand Molecules
Primary Citation
Conserved Tetramer Junction in the Kinetochore Ndc80 Complex.
Cell Rep 17 1915 1922 (2016)
PMID: 27851957 DOI: 10.1016/j.celrep.2016.10.065

Abstact

The heterotetrameric Ndc80 complex establishes connectivity along the principal longitudinal axis of a kinetochore. Its two heterodimeric subcomplexes, each with a globular end and a coiled-coil shaft, connect end-to-end to create a ∼600 Å long rod spanning the gap from centromere-proximal structures to spindle microtubules. Neither subcomplex has a known function on its own, but the heterotetrameric organization and the characteristics of the junction are conserved from yeast to man. We have determined crystal structures of two shortened ("dwarf") Ndc80 complexes that contain the full tetramer junction and both globular ends. The junction connects two α-helical coiled coils through regions of four-chain and three-chain overlap. The complexity of its structure depends on interactions among conserved amino-acid residues, suggesting a binding site for additional cellular factor(s) not yet identified.

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Primary Citation of related structures