5TC3 image
Deposition Date 2016-09-14
Release Date 2017-06-14
Last Version Date 2024-01-17
Entry Detail
PDB ID:
5TC3
Keywords:
Title:
Structure of IMP dehydrogenase from Ashbya gossypii bound to ATP and GDP
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.46 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
I 4
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Inosine-5'-monophosphate dehydrogenase
Gene (Uniprot):AGOS_AER117W
Chain IDs:A, B
Chain Length:523
Number of Molecules:2
Biological Source:Ashbya gossypii ATCC 10895
Primary Citation
A nucleotide-controlled conformational switch modulates the activity of eukaryotic IMP dehydrogenases.
Sci Rep 7 2648 2648 (2017)
PMID: 28572600 DOI: 10.1038/s41598-017-02805-x

Abstact

Inosine-5'-monophosphate dehydrogenase (IMPDH) is an essential enzyme for nucleotide metabolism and cell proliferation. Despite IMPDH is the target of drugs with antiviral, immunosuppressive and antitumor activities, its physiological mechanisms of regulation remain largely unknown. Using the enzyme from the industrial fungus Ashbya gossypii, we demonstrate that the binding of adenine and guanine nucleotides to the canonical nucleotide binding sites of the regulatory Bateman domain induces different enzyme conformations with significantly distinct catalytic activities. Thereby, the comparison of their high-resolution structures defines the mechanistic and structural details of a nucleotide-controlled conformational switch that allosterically modulates the catalytic activity of eukaryotic IMPDHs. Remarkably, retinopathy-associated mutations lie within the mechanical hinges of the conformational change, highlighting its physiological relevance. Our results expand the mechanistic repertoire of Bateman domains and pave the road to new approaches targeting IMPDHs.

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Primary Citation of related structures
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