5TBP image
Entry Detail
PDB ID:
5TBP
Keywords:
Title:
Crystal Structure of RXR-alpha ligand binding domain complexed with synthetic modulator K8003
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2016-09-12
Release Date:
2017-08-09
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Retinoic acid receptor RXR-alpha
Chain IDs:A, B, C, D
Chain Length:244
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Modulation of nongenomic activation of PI3K signalling by tetramerization of N-terminally-cleaved RXR alpha.
Nat Commun 8 16066 16066 (2017)
PMID: 28714476 DOI: 10.1038/ncomms16066

Abstact

Retinoid X receptor-alpha (RXRα) binds to DNA either as homodimers or heterodimers, but it also forms homotetramers whose function is poorly defined. We previously discovered that an N-terminally-cleaved form of RXRα (tRXRα), produced in tumour cells, activates phosphoinositide 3-kinase (PI3K) signalling by binding to the p85α subunit of PI3K and that K-80003, an anti-cancer agent, inhibits this process. Here, we report through crystallographic and biochemical studies that K-80003 binds to and stabilizes tRXRα tetramers via a 'three-pronged' combination of canonical and non-canonical mechanisms. K-80003 binding has no effect on tetramerization of RXRα, owing to the head-tail interaction that is absent in tRXRα. We also identify an LxxLL motif in p85α, which binds to the coactivator-binding groove on tRXRα and dissociates from tRXRα upon tRXRα tetramerization. These results identify conformational selection as the mechanism for inhibiting the nongenomic action of tRXRα and provide molecular insights into the development of RXRα cancer therapeutics.

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