5TAY image
Deposition Date 2016-09-10
Release Date 2016-10-12
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5TAY
Title:
Structure of rabbit RyR1 (ryanodine dataset, class 2)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ryanodine receptor 1
Gene (Uniprot):RYR1
Chain IDs:E (auth: B), F (auth: G), G (auth: I), H (auth: E)
Chain Length:4416
Number of Molecules:4
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Peptidyl-prolyl cis-trans isomerase FKBP1B
Gene (Uniprot):FKBP1B
Chain IDs:A (auth: F), B (auth: A), C (auth: H), D (auth: J)
Chain Length:108
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Structural Basis for Gating and Activation of RyR1.
Cell 167 145 157.e17 (2016)
PMID: 27662087 DOI: 10.1016/j.cell.2016.08.075

Abstact

The type-1 ryanodine receptor (RyR1) is an intracellular calcium (Ca(2+)) release channel required for skeletal muscle contraction. Here, we present cryo-EM reconstructions of RyR1 in multiple functional states revealing the structural basis of channel gating and ligand-dependent activation. Binding sites for the channel activators Ca(2+), ATP, and caffeine were identified at interdomain interfaces of the C-terminal domain. Either ATP or Ca(2+) alone induces conformational changes in the cytoplasmic assembly ("priming"), without pore dilation. In contrast, in the presence of all three activating ligands, high-resolution reconstructions of open and closed states of RyR1 were obtained from the same sample, enabling analyses of conformational changes associated with gating. Gating involves global conformational changes in the cytosolic assembly accompanied by local changes in the transmembrane domain, which include bending of the S6 transmembrane segment and consequent pore dilation, displacement, and deformation of the S4-S5 linker and conformational changes in the pseudo-voltage-sensor domain.

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