5TAB image
Deposition Date 2016-09-09
Release Date 2016-10-26
Last Version Date 2024-03-06
Entry Detail
PDB ID:
5TAB
Keywords:
Title:
Crystal Structure of the PHD Finger of PHF20
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.25 Å
R-Value Free:
0.14
R-Value Work:
0.11
R-Value Observed:
0.12
Space Group:
P 61
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PHD finger protein 20
Gene (Uniprot):PHF20
Chain IDs:A
Chain Length:53
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
PHF20 Readers Link Methylation of Histone H3K4 and p53 with H4K16 Acetylation.
Cell Rep 17 1158 1170 (2016)
PMID: 27760318 DOI: 10.1016/j.celrep.2016.09.056

Abstact

PHF20 is a core component of the lysine acetyltransferase complex MOF (male absent on the first)-NSL (non-specific lethal) that generates the major epigenetic mark H4K16ac and is necessary for transcriptional regulation and DNA repair. The role of PHF20 in the complex remains elusive. Here, we report on functional coupling between methylation readers in PHF20. We show that the plant homeodomain (PHD) finger of PHF20 recognizes dimethylated lysine 4 of histone H3 (H3K4me2) and represents an example of a native reader that selects for this modification. Biochemical and structural analyses help to explain this selectivity and the preference of Tudor2, another reader in PHF20, for dimethylated p53. Binding of the PHD finger to H3K4me2 is required for histone acetylation, accumulation of PHF20 at target genes, and transcriptional activation. Together, our findings establish a unique PHF20-mediated link between MOF histone acetyltransferase (HAT), p53, and H3K4me2, and suggest a model for rapid spreading of H4K16ac-enriched open chromatin.

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