5T8W image
Deposition Date 2016-09-08
Release Date 2017-11-01
Last Version Date 2024-10-16
Entry Detail
PDB ID:
5T8W
Title:
Cytochrome c - calixarene free
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cyc1p
Chain IDs:A, B
Chain Length:108
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Primary Citation
Protein Recognition by Functionalized Sulfonatocalix[4]arenes.
Chemistry 24 984 991 (2018)
PMID: 29125201 DOI: 10.1002/chem.201704931

Abstact

The interactions of two mono-functionalized sulfonatocalix[4]arenes with cytochrome c were investigated by structural and thermodynamic methods. The replacement of a single sulfonate with either a bromo or a phenyl substituent resulted in altered recognition of cytochrome c as evidenced by X-ray crystallography. The bromo-substituted ligand yielded a new binding mode in which a self-encapsulated calixarene dimer contributed to crystal packing. This ligand also formed a weak halogen bond with the protein. The phenyl-substituted ligand was bound to Lys4 of cytochrome c, in a 1.7 Å resolution crystal structure. A dimeric packing arrangement mediated by ligand-ligand contacts in the crystal suggested a possible assembly mechanism. The different protein recognition properties of these calixarenes are discussed.

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Primary Citation of related structures