ISDA

Deposition Date 2016-09-08

Release Date 2017-01-11

Last Version Date 2024-05-08

Entry Detail

PDB ID:

5T8P

Keywords:

TRANSFERASE

Title:

Crystal structure of murine NF-kappaB inducing kinase (NIK) bound to benzoxepin compound 2

Biological Source:

Source Organism:

Mus musculus (Taxon ID: 10090)

Host Organism:

Spodoptera frugiperda

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.32 Å

R-Value Free:

0.23

R-Value Work:

0.18

R-Value Observed:

0.18

Space Group:

P 43

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Mitogen-activated protein kinase kinase kinase 14
Gene (Uniprot):Map3k14
Chain IDs:A, B
Chain Length:349
Number of Molecules:2
Biological Source:Mus musculus

UniProt ID:Q9WUL6 Pfam ID:PF00069

Ligand Molecules

774

SO4

Primary Citation

Structure-Based Design of Tricyclic NF-kappa B Inducing Kinase (NIK) Inhibitors That Have High Selectivity over Phosphoinositide-3-kinase (PI3K).

Castanedo, G.M, Blaquiere, N, Beresini, M, Bravo, B, Brightbill, H, Chen, J, Cui, H.F, Eigenbrot, C, Everett, C, Feng, J, Godemann, R, Gogol, E, Hymowitz, S, Johnson, A, Kayagaki, N, Kohli, P.B, Knuppel, K, Kraemer, J, Kruger, S, Loke, P, McEwan, P, Montalbetti, C, Roberts, D.A, Smith, M, Steinbacher, S, Sujatha-Bhaskar, S, Takahashi, R, Wang, X, Wu, L.C, Zhang, Y, Staben, S.T.Show

J. Med. Chem. 60 627 640 (2017)

PMID: 28005357 DOI: 10.1021/acs.jmedchem.6b01363

Abstact

We report here structure-guided optimization of a novel series of NF-κB inducing kinase (NIK) inhibitors. Starting from a modestly potent, low molecular weight lead, activity was improved by designing a type 11/2 binding mode that accessed a back pocket past the methionine-471 gatekeeper. Divergent binding modes in NIK and PI3K were exploited to dampen PI3K inhibition while maintaining NIK inhibition within these series. Potent compounds were discovered that selectively inhibit the nuclear translocation of NF-κB2 (p52/REL-B) but not canonical NF-κB1 (REL-A/p50).

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Primary Citation of related structures