ISDA

Deposition Date 2016-09-06

Release Date 2017-09-13

Last Version Date 2024-10-09

Entry Detail

PDB ID:

5T87

Keywords:

TOXIN

Title:

Crystal structure of CDI complex from Cupriavidus taiwanensis LMG 19424

Biological Source:

Source Organism:

Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CIP 107171 / LMG 19424 / R1) (Taxon ID: 977880)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.40 Å

R-Value Free:

0.24

R-Value Work:

0.21

R-Value Observed:

0.21

Space Group:

P 61 2 2

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CdiI immunity protein
Gene (Uniprot):RALTA_A1586
Chain IDs:A, B, C, D
Chain Length:116
Number of Molecules:4
Biological Source:Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CIP 107171 / LMG 19424 / R1)

UniProt ID:B3R1C2

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CdiA toxin
Gene (Uniprot):RALTA_A1585
Chain IDs:E, F, G, H
Chain Length:76
Number of Molecules:4
Biological Source:Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CIP 107171 / LMG 19424 / R1)

UniProt ID:B3R1C1

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
MSE	A	MET	modified residue

Primary Citation

Target highlights from the first post-PSI CASP experiment (CASP12, May-August 2016).

Kryshtafovych, A, Albrecht, R, Basle, A, Bule, P, Caputo, A.T, Carvalho, A.L, Chao, K.L, Diskin, R, Fidelis, K, Fontes, C.M.G.A, Fredslund, F, Gilbert, H.J, Goulding, C.W, Hartmann, M.D, Hayes, C.S, Herzberg, O, Hill, J.C, Joachimiak, A, Kohring, G.W, Koning, R.I, Lo Leggio, L, Mangiagalli, M, Michalska, K, Moult, J, Najmudin, S, Nardini, M, Nardone, V, Ndeh, D, Nguyen, T.H, Pintacuda, G, Postel, S, van Raaij, M.J, Roversi, P, Shimon, A, Singh, A.K, Sundberg, E.J, Tars, K, Zitzmann, N, Schwede, T.Show

Proteins 86 Suppl 1 27 50 (2018)

PMID: 28960539 DOI: 10.1002/prot.25392

Abstact

The functional and biological significance of the selected CASP12 targets are described by the authors of the structures. The crystallographers discuss the most interesting structural features of the target proteins and assess whether these features were correctly reproduced in the predictions submitted to the CASP12 experiment.

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Protein

Chemical

Disease

Primary Citation of related structures