5T7G image
Deposition Date 2016-09-04
Release Date 2017-10-11
Last Version Date 2024-10-09
Entry Detail
PDB ID:
5T7G
Keywords:
Title:
Crystal Structure of Murine MHC-I H-2Dd in complex with Murine Beta2-Microglobulin and a Variant of Peptide (PT9) of HIV gp120 MN Isolate (IGPGRAFYT)
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.96 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:H-2 class I histocompatibility antigen, D-D alpha chain
Gene (Uniprot):H2-D1
Chain IDs:A, D (auth: C)
Chain Length:275
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2m
Chain IDs:B, E (auth: D)
Chain Length:100
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Peptide (PT9) of HIV gp120 MN isolate (IGPGRAFYT)
Chain IDs:C (auth: P), F (auth: Q)
Chain Length:9
Number of Molecules:2
Biological Source:Human immunodeficiency virus type 1 group M subtype B (isolate MN)
Ligand Molecules
Primary Citation
Effects of Cross-Presentation, Antigen Processing, and Peptide Binding in HIV Evasion of T Cell Immunity.
J. Immunol. 200 1853 1864 (2018)
PMID: 29374075 DOI: 10.4049/jimmunol.1701523

Abstact

Unlike cytosolic processing and presentation of viral Ags by virus-infected cells, Ags first expressed in infected nonprofessional APCs, such as CD4+ T cells in the case of HIV, are taken up by dendritic cells and cross-presented. This generally requires entry through the endocytic pathway, where endosomal proteases have first access for processing. Thus, understanding virus escape during cross-presentation requires an understanding of resistance to endosomal proteases, such as cathepsin S (CatS). We have modified HIV-1MN gp120 by mutating a key CatS cleavage site (Thr322Thr323) in the V3 loop of the immunodominant epitope IGPGRAFYTT to IGPGRAFYVV to prevent digestion. We found this mutation to facilitate cross-presentation and provide evidence from MHC binding and X-ray crystallographic structural studies that this results from preservation of the epitope rather than an increased epitope affinity for the MHC class I molecule. In contrast, when the protein is expressed by a vaccinia virus in the cytosol, the wild-type protein is immunogenic without this mutation. These proof-of-concept results show that a virus like HIV, infecting predominantly nonprofessional presenting cells, can escape T cell recognition by incorporating a CatS cleavage site that leads to destruction of an immunodominant epitope when the Ag undergoes endosomal cross-presentation.

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Primary Citation of related structures