5T6M image
Deposition Date 2016-09-01
Release Date 2016-12-21
Last Version Date 2023-11-15
Entry Detail
PDB ID:
5T6M
Keywords:
Title:
Structure of the tryptophan synthase b-subunit from Pyroccus furiosus with b-methyltryptophan non-covalently bound
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tryptophan synthase beta chain 1
Gene (Uniprot):trpB1
Chain IDs:A, B, C, D
Chain Length:396
Number of Molecules:4
Biological Source:Pyrococcus furiosus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
LLP A LYS modified residue
Primary Citation
Tryptophan Synthase Uses an Atypical Mechanism To Achieve Substrate Specificity.
Biochemistry 55 7043 7046 (2016)
PMID: 27935677 DOI: 10.1021/acs.biochem.6b01127

Abstact

Tryptophan synthase (TrpS) catalyzes the final steps in the biosynthesis of l-tryptophan from l-serine (Ser) and indole-3-glycerol phosphate (IGP). We report that native TrpS can also catalyze a productive reaction with l-threonine (Thr), leading to (2S,3S)-β-methyltryptophan. Surprisingly, β-substitution occurs in vitro with a 3.4-fold higher catalytic efficiency for Ser over Thr using saturating indole, despite a >82000-fold preference for Ser in direct competition using IGP. Structural data identify a novel product binding site, and kinetic experiments clarify the atypical mechanism of specificity: Thr binds efficiently but decreases the affinity for indole and disrupts the allosteric signaling that regulates the catalytic cycle.

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Primary Citation of related structures