5T6F image
Deposition Date 2016-09-01
Release Date 2016-11-23
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5T6F
Title:
1.90 A resolution structure of Norovirus 3CL protease in complex with the dipeptidyl inhibitor 7l (orthorhombic P form)
Biological Source:
Source Organism:
Norwalk virus (Taxon ID: 524364)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Genome polyprotein
Gene (Uniprot):ORF1
Chain IDs:A, B
Chain Length:188
Number of Molecules:2
Biological Source:Norwalk virus
Ligand Molecules
Primary Citation
Structure-based exploration and exploitation of the S4 subsite of norovirus 3CL protease in the design of potent and permeable inhibitors.
Eur J Med Chem 126 502 516 (2016)
PMID: 27914364 DOI: 10.1016/j.ejmech.2016.11.027

Abstact

Human noroviruses are the primary cause of epidemic and sporadic acute gastroenteritis. The worldwide high morbidity and mortality associated with norovirus infections, particularly among the elderly, immunocompromised patients and children, constitute a serious public health concern. There are currently no approved human vaccines or norovirus-specific small-molecule therapeutics or prophylactics. Norovirus 3CL protease has recently emerged as a potential therapeutic target for the development of anti-norovirus agents. We hypothesized that the S4 subsite of the enzyme may provide an effective means of designing potent and cell permeable inhibitors of the enzyme. We report herein the structure-guided exploration and exploitation of the S4 subsite of norovirus 3CL protease in the design and synthesis of effective inhibitors of the protease.

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Primary Citation of related structures