5T61 image
Entry Detail
PDB ID:
5T61
Keywords:
Title:
TUNGSTEN-CONTAINING FORMYLMETHANOFURAN DEHYDROGENASE FROM METHANOTHERMOBACTER WOLFEII, TRICLINIC FORM AT 2.55 A
Biological Source:
PDB Version:
Deposition Date:
2016-09-01
Release Date:
2016-10-19
Method Details:
Experimental Method:
Resolution:
2.55 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tungsten formylmethanofuran dehydrogenase subunit fwdA
Chain IDs:A, G, M, S, Y, EA (auth: e), KA (auth: k), QA (auth: q)
Chain Length:270
Number of Molecules:8
Biological Source:Methanothermobacter wolfeii
Polymer Type:polypeptide(L)
Description:Tungsten formylmethanofuran dehydrogenase subunit B
Chain IDs:B, H, N, T, Z, FA (auth: f), LA (auth: l), RA (auth: r)
Chain Length:130
Number of Molecules:8
Biological Source:Methanothermobacter sp. CaT2
Polymer Type:polypeptide(L)
Description:Tungsten-containing formylmethanofuran dehydrogenase 2 subunit C
Chain IDs:C, I, O, U, AA (auth: a), GA (auth: g), MA (auth: m), SA (auth: s)
Chain Length:270
Number of Molecules:8
Biological Source:Methanothermobacter wolfeii
Polymer Type:polypeptide(L)
Description:Tungsten formylmethanofuran dehydrogenase subunit fwdD
Chain IDs:D, J, P, V, BA (auth: b), HA (auth: h), NA (auth: n), TA (auth: t)
Chain Length:130
Number of Molecules:8
Biological Source:Methanothermobacter wolfeii
Polymer Type:polypeptide(L)
Description:Tungsten formylmethanofuran dehydrogenase subunit fwdG
Chain IDs:E, K, Q, W, CA (auth: c), IA (auth: i), OA (auth: o), UA (auth: u)
Chain Length:270
Number of Molecules:8
Biological Source:Methanothermobacter wolfeii
Polymer Type:polypeptide(L)
Description:Tungsten formylmethanofuran dehydrogenase subunit fwdF
Chain IDs:F, L, R, X, DA (auth: d), JA (auth: j), PA (auth: p), VA (auth: v)
Chain Length:349
Number of Molecules:8
Biological Source:Methanothermobacter wolfeii
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
KCX A LYS modified residue
Primary Citation
The methanogenic CO2 reducing-and-fixing enzyme is bifunctional and contains 46 [4Fe-4S] clusters.
Science 354 114 117 (2016)
PMID: 27846502 DOI: 10.1126/science.aaf9284

Abstact

Biological methane formation starts with a challenging adenosine triphosphate (ATP)-independent carbon dioxide (CO2) fixation process. We explored this enzymatic process by solving the x-ray crystal structure of formyl-methanofuran dehydrogenase, determined here as Fwd(ABCDFG)2 and Fwd(ABCDFG)4 complexes, from Methanothermobacter wolfeii The latter 800-kilodalton apparatus consists of four peripheral catalytic sections and an electron-supplying core with 46 electronically coupled [4Fe-4S] clusters. Catalysis is separately performed by subunits FwdBD (FwdB and FwdD), which are related to tungsten-containing formate dehydrogenase, and subunit FwdA, a binuclear metal center carrying amidohydrolase. CO2 is first reduced to formate in FwdBD, which then diffuses through a 43-angstrom-long tunnel to FwdA, where it condenses with methanofuran to formyl-methanofuran. The arrangement of [4Fe-4S] clusters functions as an electron relay but potentially also couples the four tungstopterin active sites over 206 angstroms.

Legend

Protein

Chemical

Disease

Primary Citation of related structures