5T56 image
Deposition Date 2016-08-30
Release Date 2017-07-12
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5T56
Keywords:
Title:
[3]catenane from MccJ25 G12R/I13C/G21C lasso peptide
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
20
Conformers Submitted:
20
Selection Criteria:
all calculated structures submitted
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Microcin J25
Gene (Uniprot):mcjA
Mutagens:UNP residues 38-48
Chain IDs:A, C
Chain Length:12
Number of Molecules:2
Biological Source:Escherichia coli
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Microcin J25
Gene (Uniprot):mcjA
Mutagens:UNP residues 51-57
Chain IDs:B, D
Chain Length:9
Number of Molecules:2
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Self-Assembly of Catenanes from Lasso Peptides.
J. Am. Chem. Soc. 138 14214 14217 (2016)
PMID: 27768305 DOI: 10.1021/jacs.6b09454

Abstact

Lasso peptides exist naturally in a threaded state as [1]rotaxanes, and we reasoned that lasso peptides cleaved in their loop region could serve as building blocks for catenanes. Mutagenesis of the lasso peptide microcin J25 (MccJ25) with two cysteine residues followed by cleavage of the peptide with trypsin led to a [2]rotaxane structure that self-assembled into a [3]catenane and [4]catenanes at room temperature in aqueous solution. The [3]catenane represents the smallest ring size of a catenane composed solely of polypeptide segments. The NMR structure of the [3]catenane was determined, suggesting that burial of hydrophobic residues may be a driving force for assembly of the catenane structure.

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Primary Citation of related structures