5T3L image
Deposition Date 2016-08-25
Release Date 2016-11-30
Last Version Date 2024-03-06
Entry Detail
PDB ID:
5T3L
Keywords:
Title:
B-DNA (CGCGAATTCGCG)2 soaked with selenourea for 1 min
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
1.58 Å
R-Value Free:
0.18
R-Value Work:
0.14
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
Chain IDs:A, B
Chain Length:12
Number of Molecules:2
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Selenourea: a convenient phasing vehicle for macromolecular X-ray crystal structures.
Sci Rep 6 37123 37123 (2016)
PMID: 27841370 DOI: 10.1038/srep37123

Abstact

Majority of novel X-ray crystal structures of proteins are currently solved using the anomalous diffraction signal provided by selenium after incorporation of selenomethionine instead of natural methionine by genetic engineering methods. However, selenium can be inserted into protein crystals in the form of selenourea (SeC(NH2)2), by adding the crystalline powder of selenourea into mother liquor or cryo-solution with native crystals, in analogy to the classic procedure of heavy-atom derivatization. Selenourea is able to bind to reactive groups at the surface of macromolecules primarily through hydrogen bonds, where the selenium atom may serve as acceptor and amide groups as donors. Selenourea has different chemical properties than heavy-atom reagents and halide ions and provides a convenient way of phasing crystal structures of macromolecules.

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Primary Citation of related structures
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