5SV1 image
Deposition Date 2016-08-04
Release Date 2016-09-28
Last Version Date 2023-10-04
Entry Detail
PDB ID:
5SV1
Title:
Structure of the ExbB/ExbD complex from E. coli at pH 4.5
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.29
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Biopolymer transport protein ExbB
Chain IDs:A, B, C, D, E, F, G, H, I, J
Chain Length:244
Number of Molecules:10
Biological Source:Escherichia coli DH1
Polymer Type:polypeptide(L)
Molecule:Biopolymer transport protein ExbD
Chain IDs:K (auth: Y), L (auth: Z)
Chain Length:58
Number of Molecules:2
Biological Source:Escherichia coli DH1
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MLY A LYS modified residue
Ligand Molecules
Primary Citation
Structural insight into the role of the Ton complex in energy transduction.
Nature 538 60 65 (2016)
PMID: 27654919 DOI: 10.1038/nature19757

Abstact

In Gram-negative bacteria, outer membrane transporters import nutrients by coupling to an inner membrane protein complex called the Ton complex. The Ton complex consists of TonB, ExbB, and ExbD, and uses the proton motive force at the inner membrane to transduce energy to the outer membrane via TonB. Here, we structurally characterize the Ton complex from Escherichia coli using X-ray crystallography, electron microscopy, double electron-electron resonance (DEER) spectroscopy, and crosslinking. Our results reveal a stoichiometry consisting of a pentamer of ExbB, a dimer of ExbD, and at least one TonB. Electrophysiology studies show that the Ton subcomplex forms pH-sensitive cation-selective channels and provide insight into the mechanism by which it may harness the proton motive force to produce energy.

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