5SDT image
Entry Detail
PDB ID:
5SDT
Title:
Structure of liver pyruvate kinase in complex with anthraquinone derivative 15
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2022-01-20
Release Date:
2022-03-16
Method Details:
Experimental Method:
Resolution:
1.94 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Pyruvate kinase
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:447
Number of Molecules:8
Biological Source:Homo sapiens
Primary Citation
Anthraquinone derivatives as ADP-competitive inhibitors of liver pyruvate kinase.
Eur.J.Med.Chem. 234 114270 114270 (2022)
PMID: 35290845 DOI: 10.1016/j.ejmech.2022.114270

Abstact

Liver pyruvate kinase (PKL) is a major regulator of metabolic flux and ATP production during liver cell glycolysis and is considered a potential drug target for the treatment of non-alcoholic fatty liver disease (NAFLD). In this study, we report the first ADP-competitive PKL inhibitors and identify several starting points for the further optimization of these inhibitors. Modeling and structural biology guided the optimization of a PKL-specific anthraquinone-based compound. A structure-activity relationship study of 47 novel synthetic derivatives revealed PKL inhibitors with half-maximal inhibitory concentration (IC50) values in the 200 nM range. Despite the difficulty involved in studying a binding site as exposed as the ADP site, these derivatives feature expanded structural diversity and chemical spaces that may be used to improve their inhibitory activities against PKL. The obtained results expand the knowledge of the structural requirements for interactions with the ADP-binding site of PKL.

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