5QKD image
Entry Detail
PDB ID:
5QKD
Keywords:
Title:
Group deposition of library data - Crystal Structure of EcDsbA after initial refinement with no ligand modelled (structure A10_1)
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2019-01-27
Release Date:
2020-02-05
Method Details:
Experimental Method:
Resolution:
2.11 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Thiol:disulfide interchange protein
Chain IDs:A, B
Chain Length:189
Number of Molecules:2
Biological Source:Escherichia coli K-12
Primary Citation
Rapid Elaboration of Fragments into Leads by X-ray Crystallographic Screening of Parallel Chemical Libraries (REFiLX).
J.Med.Chem. 63 6863 6875 (2020)
PMID: 32529824 DOI: 10.1021/acs.jmedchem.0c00111

Abstact

A bottleneck in fragment-based lead development is the lack of systematic approaches to elaborate the initial fragment hits, which usually bind with low affinity to their target. Herein, we describe an analysis using X-ray crystallography of a diverse library of compounds prepared using microscale parallel synthesis. This approach yielded an 8-fold increase in affinity and detailed structural information for the resulting complex, providing an efficient and broadly applicable approach to early fragment development.

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