5OYK image
Deposition Date 2017-09-11
Release Date 2018-04-25
Last Version Date 2024-01-17
Entry Detail
PDB ID:
5OYK
Title:
Outer-membrane expressed OmpT of Vibrio cholerae
Biological Source:
Source Organism:
Vibrio cholerae (Taxon ID: 666)
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Gram-negative porin family protein
Gene (Uniprot):ompT
Chain IDs:A
Chain Length:325
Number of Molecules:1
Biological Source:Vibrio cholerae
Ligand Molecules
Primary Citation
Unusual Constriction Zones in the Major Porins OmpU and OmpT from Vibrio cholerae.
Structure 26 708 721.e4 (2018)
PMID: 29657131 DOI: 10.1016/j.str.2018.03.010

Abstact

The outer membranes (OM) of many Gram-negative bacteria contain general porins, which form nonspecific, large-diameter channels for the diffusional uptake of small molecules required for cell growth and function. While the porins of Enterobacteriaceae (e.g., E. coli OmpF and OmpC) have been extensively characterized structurally and biochemically, much less is known about their counterparts in Vibrionaceae. Vibrio cholerae, the causative agent of cholera, has two major porins, OmpU and OmpT, for which no structural information is available despite their importance for the bacterium. Here we report high-resolution X-ray crystal structures of V. cholerae OmpU and OmpT complemented with molecular dynamics simulations. While similar overall to other general porins, the channels of OmpU and OmpT have unusual constrictions that create narrower barriers for small-molecule permeation and change the internal electric fields of the channels. Together with electrophysiological and in vitro transport data, our results illuminate small-molecule uptake within the Vibrionaceae.

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Primary Citation of related structures
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