5OY0 image
Deposition Date 2017-09-07
Release Date 2018-02-21
Last Version Date 2025-10-01
Entry Detail
PDB ID:
5OY0
Keywords:
Title:
Structure of synechocystis photosystem I trimer at 2.5A resolution
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XI
Gene (Uniprot):psaL
Chain IDs:FA (auth: 0)
Chain Length:154
Number of Molecules:1
Biological Source:Synechocystis sp. PCC 6803
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A1
Gene (Uniprot):psaA
Chain IDs:W (auth: 1)
Chain Length:744
Number of Molecules:1
Biological Source:Synechocystis sp. PCC 6803
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit II
Gene (Uniprot):psaD
Chain IDs:Z (auth: 4)
Chain Length:140
Number of Molecules:1
Biological Source:Synechocystis sp. PCC 6803
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit PsaK 2
Gene (Uniprot):psaK2
Chain IDs:EA (auth: 8)
Chain Length:79
Number of Molecules:1
Biological Source:Synechocystis sp. PCC 6803
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A1
Gene (Uniprot):psaA
Chain IDs:A, L (auth: a)
Chain Length:751
Number of Molecules:2
Biological Source:Synechocystis sp. PCC 6803
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A2
Gene (Uniprot):psaB
Chain IDs:B, X (auth: 2)
Chain Length:731
Number of Molecules:2
Biological Source:Synechocystis sp. PCC 6803
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I iron-sulfur center
Gene (Uniprot):psaC
Chain IDs:C, Y (auth: 3)
Chain Length:80
Number of Molecules:2
Biological Source:Synechocystis sp. PCC 6803
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit II
Gene (Uniprot):psaD
Chain IDs:D, O (auth: d)
Chain Length:141
Number of Molecules:2
Biological Source:Synechocystis sp. PCC 6803
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IV
Gene (Uniprot):psaE
Chain IDs:E, AA (auth: 5)
Chain Length:69
Number of Molecules:2
Biological Source:Synechocystis sp. PCC 6803
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit III
Gene (Uniprot):psaF
Chain IDs:F, Q (auth: f), BA (auth: 6)
Chain Length:143
Number of Molecules:3
Biological Source:Synechocystis sp. PCC 6803
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VIII
Gene (Uniprot):psaI
Chain IDs:G (auth: I), R (auth: i)
Chain Length:40
Number of Molecules:2
Biological Source:Synechocystis sp. PCC 6803
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IX
Gene (Uniprot):psaJ
Chain IDs:H (auth: J), S (auth: j), DA (auth: 7)
Chain Length:40
Number of Molecules:3
Biological Source:Synechocystis sp. PCC 6803
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit PsaK 2
Gene (Uniprot):psaK2
Chain IDs:I (auth: K)
Chain Length:78
Number of Molecules:1
Biological Source:Synechocystis sp. PCC 6803
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XI
Gene (Uniprot):psaL
Chain IDs:J (auth: L), U (auth: l)
Chain Length:157
Number of Molecules:2
Biological Source:Synechocystis sp. PCC 6803
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XII
Gene (Uniprot):psaM
Chain IDs:K (auth: M), V (auth: m), GA (auth: 9)
Chain Length:31
Number of Molecules:3
Biological Source:Synechocystis sp. PCC 6803
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A2
Gene (Uniprot):psaB
Chain IDs:M (auth: b)
Chain Length:731
Number of Molecules:1
Biological Source:Synechocystis sp. PCC 6803
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I iron-sulfur center
Gene (Uniprot):psaC
Chain IDs:N (auth: c)
Chain Length:80
Number of Molecules:1
Biological Source:Synechocystis sp. PCC 6803
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IV
Gene (Uniprot):psaE
Chain IDs:P (auth: e)
Chain Length:69
Number of Molecules:1
Biological Source:Synechocystis sp. PCC 6803
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VIII
Gene (Uniprot):psaI
Chain IDs:CA (auth: h)
Chain Length:38
Number of Molecules:1
Biological Source:Synechocystis sp. PCC 6803
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit PsaK 2
Gene (Uniprot):psaK2
Chain IDs:T (auth: k)
Chain Length:78
Number of Molecules:1
Biological Source:Synechocystis sp. PCC 6803
Primary Citation
Structure and function of wild-type and subunit-depleted photosystem I in Synechocystis.
Biochim. Biophys. Acta 1859 645 654 (2018)
PMID: 29414678 DOI: 10.1016/j.bbabio.2018.02.002

Abstact

The ability of photosynthetic organisms to use the sun's light as a sole source of energy sustains life on our planet. Photosystems I (PSI) and II (PSII) are large, multi-subunit, pigment-protein complexes that enable photosynthesis, but this intriguing process remains to be explained fully. Currently, crystal structures of these complexes are available for thermophilic prokaryotic cyanobacteria. The mega-Dalton trimeric PSI complex from thermophilic cyanobacterium, Thermosynechococcus elongatus, was solved at 2.5 Å resolution with X-ray crystallography. That structure revealed the positions of 12 protein subunits (PsaA-F, PsaI-M, and PsaX) and 127 cofactors. Although mesophilic organisms perform most of the world's photosynthesis, no well-resolved trimeric structure of a mesophilic organism exists. Our research model for a mesophilic cyanobacterium was Synechocystis sp. PCC6803. This study aimed to obtain well-resolved crystal structures of [1] a monomeric PSI with all subunits, [2] a trimeric PSI with a reduced number of subunits, and [3] the full, trimeric wild-type PSI complex. We only partially succeeded with the first two structures, but we successfully produced the trimeric PSI structure at 2.5 Å resolution. This structure was comparable to that of the thermophilic species, but we provided more detail. The PSI trimeric supercomplex consisted of 33 protein subunits, 72 carotenoids, 285 chlorophyll a molecules, 51 lipids, 9 iron-sulfur clusters, 6 plastoquinones, 6 putative calcium ions, and over 870 water molecules. This study showed that the structure of the PSI in Synechocystis sp. PCC6803 differed from previously described PSI structures. These findings have broadened our understanding of PSI structure.

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