5OXE image
Deposition Date 2017-09-06
Release Date 2017-11-22
Last Version Date 2024-05-15
Entry Detail
PDB ID:
5OXE
Keywords:
Title:
Structure of major capsid protein VP1 of Aeropyrum pernix bacilliform virus 1 APBV1
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.70 Å
Aggregation State:
HELICAL ARRAY
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Major virion protein
Chain IDs:A
Chain Length:81
Number of Molecules:1
Biological Source:Aeropyrum pernix bacilliform virus 1
Ligand Molecules
Primary Citation
Unique architecture of thermophilic archaeal virus APBV1 and its genome packaging.
Nat Commun 8 1436 1436 (2017)
PMID: 29127347 DOI: 10.1038/s41467-017-01668-0

Abstact

Archaeal viruses have evolved to infect hosts often thriving in extreme conditions such as high temperatures. However, there is a paucity of information on archaeal virion structures, genome packaging, and determinants of temperature resistance. The rod-shaped virus APBV1 (Aeropyrum pernix bacilliform virus 1) is among the most thermostable viruses known; it infects a hyperthermophile Aeropyrum pernix, which grows optimally at 90 °C. Here we report the structure of APBV1, determined by cryo-electron microscopy at near-atomic resolution. Tight packing of the major virion glycoprotein (VP1) is ensured by extended hydrophobic interfaces, and likely contributes to the extreme thermostability of the helical capsid. The double-stranded DNA is tightly packed in the capsid as a left-handed superhelix and held in place by the interactions with positively charged residues of VP1. The assembly is closed by specific capping structures at either end, which we propose to play a role in DNA packing and delivery.

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Protein

Chemical

Disease

Primary Citation of related structures
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