5OX4 image
Entry Detail
PDB ID:
5OX4
Keywords:
Title:
Glycogen Phosphorylase in complex with CK900
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2017-09-05
Release Date:
2018-02-28
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.16
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Glycogen phosphorylase, muscle form
Chain IDs:A
Chain Length:843
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Primary Citation
Probing the beta-pocket of the active site of human liver glycogen phosphorylase with 3-(C-beta-d-glucopyranosyl)-5-(4-substituted-phenyl)-1, 2, 4-triazole inhibitors.
Bioorg. Chem. 77 485 493 (2018)
PMID: 29454281 DOI: 10.1016/j.bioorg.2018.02.008

Abstact

Human liver glycogen phosphorylase (hlGP), a key enzyme in glycogen metabolism, is a valid pharmaceutical target for the development of new anti-hyperglycaemic agents for type 2 diabetes. Inhibitor discovery studies have focused on the active site and in particular on glucopyranose based compounds with a beta-1 substituent long enough to exploit interactions with a cavity adjacent to the active site, termed the beta-pocket. Recently, C-beta-d-glucopyranosyl imidazoles and 1, 2, 4-triazoles proved to be the best known glucose derived inhibitors of hlGP. Here we probe the beta-pocket by studying the inhibitory effect of six different groups at the para position of 3-(beta-d-glucopyranosyl phenyl)-5-phenyl-, 1, 2, 4-triazoles in hlGP by kinetics and X-ray crystallography. The most bioactive compound was the one with an amine substituent to show a K(i) value of 0.43 muM. Structural studies have revealed the physicochemical diversity of the beta-pocket providing information for future rational inhibitor design studies.

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