5OSH image
Deposition Date 2017-08-17
Release Date 2017-12-13
Last Version Date 2024-05-08
Entry Detail
PDB ID:
5OSH
Title:
Structure of retromer VPS29-VPS35C subunits complexed with RidL N-terminal domain (1-236)
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.30 Å
R-Value Free:
0.31
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Vacuolar protein sorting-associated protein 29
Gene (Uniprot):VPS29
Chain IDs:A, D, G, J
Chain Length:182
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Vacuolar protein sorting-associated protein 35
Gene (Uniprot):VPS35
Chain IDs:B, E, H, K
Chain Length:299
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Interaptin
Chain IDs:C, F, I, L
Chain Length:223
Number of Molecules:4
Biological Source:Legionella pneumophila subsp. pneumophila ATCC 43290
Ligand Molecules
Primary Citation
Molecular mechanism for the subversion of the retromer coat by the Legionella effector RidL.
Proc. Natl. Acad. Sci. U.S.A. 114 E11151 E11160 (2017)
PMID: 29229824 DOI: 10.1073/pnas.1715361115

Abstact

Microbial pathogens employ sophisticated virulence strategies to cause infections in humans. The intracellular pathogen Legionella pneumophila encodes RidL to hijack the host scaffold protein VPS29, a component of retromer and retriever complexes critical for endosomal cargo recycling. Here, we determined the crystal structure of L. pneumophila RidL in complex with the human VPS29-VPS35 retromer subcomplex. A hairpin loop protruding from RidL inserts into a conserved pocket on VPS29 that is also used by cellular ligands, such as Tre-2/Bub2/Cdc16 domain family member 5 (TBC1D5) and VPS9-ankyrin repeat protein for VPS29 binding. Consistent with the idea of molecular mimicry in protein interactions, RidL outcompeted TBC1D5 for binding to VPS29. Furthermore, the interaction of RidL with retromer did not interfere with retromer dimerization but was essential for association of RidL with retromer-coated vacuolar and tubular endosomes. Our work thus provides structural and mechanistic evidence into how RidL is targeted to endosomal membranes.

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Primary Citation of related structures