5OSG image
Deposition Date 2017-08-17
Release Date 2017-11-15
Last Version Date 2024-05-08
Entry Detail
PDB ID:
5OSG
Keywords:
Title:
Structure of KSRP in context of Leishmania donovani 80S
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:18S rRNA
Chain IDs:B (auth: 2)
Chain Length:2205
Number of Molecules:1
Biological Source:Leishmania donovani
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S6
Gene (Uniprot):RPS6
Chain IDs:C (auth: P)
Chain Length:249
Number of Molecules:1
Biological Source:Leishmania donovani
Polymer Type:polypeptide(L)
Molecule:RNA binding protein, putative
Chain IDs:A (auth: h)
Chain Length:235
Number of Molecules:1
Biological Source:Leishmania donovani
Ligand Molecules
Primary Citation
The cryo-EM Structure of a Novel 40S Kinetoplastid-Specific Ribosomal Protein.
Structure 25 1785 1794.e3 (2017)
PMID: 29107485 DOI: 10.1016/j.str.2017.09.014

Abstact

Kinetoplastids are potentially lethal protozoan pathogens affecting more than 20 million people worldwide. There is a critical need for more specific targets for the development of safer anti-kinetoplastid therapeutic molecules that can replace the scarce and highly cytotoxic current drugs. The kinetoplastid ribosome represents a potential therapeutic target due to its relative structural divergence when compared with its human counterpart. However, several kinetoplastid-specific ribosomal features remain uncharacterized. Here, we present the near-atomic cryoelectron microscopy structure of a novel bona fide kinetoplastid-specific ribosomal (r-) protein (KSRP) bound to the ribosome. KSRP is an essential protein located at the solvent face of the 40S subunit, where it binds and stabilizes kinetoplastid-specific domains of rRNA, suggesting its role in ribosome integrity. KSRP also interacts with the r-protein eS6 at a region that is only conserved in kinetoplastids. The kinetoplastid-specific ribosomal environment of KSRP provides a promising target for the design of safer anti-kinetoplastidian drugs.

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Primary Citation of related structures