5OOK image
Deposition Date 2017-08-08
Release Date 2018-06-20
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5OOK
Keywords:
Title:
Structure of A. marina Phycocyanin contains overlapping isoforms
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 63
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phycocyanin, alpha subunit
Gene (Uniprot):cpcA
Chain IDs:A
Chain Length:162
Number of Molecules:1
Biological Source:Acaryochloris marina
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phycocyanin, beta subunit
Gene (Uniprot):cpcB
Chain IDs:B
Chain Length:172
Number of Molecules:1
Biological Source:Acaryochloris marina
Primary Citation
Structural heterogeneity leads to functional homogeneity in A. marina phycocyanin.
Biochim. Biophys. Acta 1859 544 553 (2018)
PMID: 29704497 DOI: 10.1016/j.bbabio.2018.04.007

Abstact

The major light harvesting antenna in all cyanobacterial species is the phycobilisome (PBS). The smallest PBS identified to date is that of Acaryochloris marina (A. marina), composed of a single four-hexamer rod. We have determined the crystal structure of phycocyanin (AmPC), the major component of the A. marina PBS (AmPBS) to 2.1 Å. The basic unit of the AmPC is a heterodimer of two related subunits (α and β), and we show that the asymmetric unit contains a superposition of two α and two β isoforms, the products of the simultaneous expression of different genes. This is the first time to our knowledge that isolated proteins crystallized with such identifiable heterogeneity. We believe that the presence of the different isoforms allows the AmPBS to have a significant bathochromic shift in its fluorescence emission spectrum, allowing, in the total absence of allophycocyanin, a better overlap with absorption of the chlorophyll d-containing reaction centers. We show that this bathochromic shift exists in intact AmPBS as well as in its disassembled components, thus suggesting that AmPC can efficiently serve as the AmPBS terminal emitter.

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