5OMI image
Deposition Date 2017-07-31
Release Date 2018-08-29
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5OMI
Keywords:
Title:
Crystal structure of GP2 from Lassa virus in a post fusion conformation
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.56 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pre-glycoprotein polyprotein GP complex
Chain IDs:A, B, C
Chain Length:118
Number of Molecules:3
Biological Source:Lassa mammarenavirus
Primary Citation
Variations in Core Packing of GP2 from Old World Mammarenaviruses in their Post-Fusion Conformations Affect Membrane-Fusion Efficiencies.
J.Mol.Biol. 431 2095 2111 (2019)
PMID: 31004664 DOI: 10.1016/j.jmb.2019.04.012

Abstact

Lassa virus (LASV) is a notorious human pathogen in West Africa. Its class I trimeric spike complex displays a distinct architecture, and its cell entry mechanism involves unique attributes not shared by other related viruses. We determined the crystal structure of the GP2 fusion glycoprotein from the spike complex of LASV (GP2LASV) in its post-fusion conformation. GP2LASV adopts a canonical helical bundle configuration similarly to other viruses in its family. The core packing of GP2LASV, however, is more organized compared to GP2 from other viruses reducing the formation of internal hydrophobic cavities. We demonstrate a link between the formation of such unfavorable hydrophobic cavities and the efficiencies of membrane fusion and cell entry. Our study suggests that LASV has evolved a more efficient membrane fusogen compared to other viruses from its family by optimizing the post-fusion configuration of its GP2 module.

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Primary Citation of related structures