5OJY image
Deposition Date 2017-07-24
Release Date 2018-04-11
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5OJY
Keywords:
Title:
Co-complex structure of regulator protein 2 (PamR2) with pamamycin 607 from Streptomyces alboniger
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.19
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 62 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:TetR family transcription regulator
Gene (Uniprot):pamR2
Chain IDs:A
Chain Length:254
Number of Molecules:1
Biological Source:Streptomyces alboniger
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSS A CYS modified residue
Primary Citation
Design, development and application of whole-cell based antibiotic-specific biosensor.
Metab. Eng. 47 263 270 (2018)
PMID: 29609044 DOI: 10.1016/j.ymben.2018.03.019

Abstact

Synthetic biology techniques hold great promise for optimising the production of natural products by microorganisms. However, evaluating the phenotype of a modified bacterium represents a major bottleneck to the engineering cycle - particularly for antibiotic-producing actinobacteria strains, which grow slowly and are challenging to genetically manipulate. Here, we report the generation and application of antibiotic-specific whole-cell biosensor derived from TetR transcriptional repressor for use in identifying and optimising antibiotic producers. The constructed biosensor was successfully used to improve production of polyketide antibiotic pamamycin. However, an initial biosensor based on native genetic elements had inadequate dynamic and operating ranges. To overcome these limitations, we fine-tuned biosensor performance through alterations of the promoter and operator of output module and the ligand affinity of transcription factor module, which enabled us to deduce recommendations for building and application of actinobacterial biosensors.

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Primary Citation of related structures