5OJQ image
Deposition Date 2017-07-22
Release Date 2017-08-09
Last Version Date 2024-05-08
Entry Detail
PDB ID:
5OJQ
Title:
The modeled structure of of wild type extended type VI secretion system sheath/tube complex in vibrio cholerae based on cryo-EM reconstruction of the non-contractile sheath/tube complex
Biological Source:
Source Organism:
Vibrio cholerae (Taxon ID: 666)
Method Details:
Experimental Method:
Resolution:
3.70 Å
Aggregation State:
HELICAL ARRAY
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Haemolysin co-regulated protein
Gene (Uniprot):hcp
Chain IDs:A (auth: 1), C (auth: 2), E (auth: 3), G (auth: 4), I (auth: 5), K (auth: 6), S (auth: L), U (auth: N), W (auth: P), Y (auth: R), AA (auth: T), CA (auth: V), KA (auth: M), MA (auth: O), OA (auth: Q), QA (auth: S), SA (auth: U), UA (auth: W)
Chain Length:170
Number of Molecules:18
Biological Source:Vibrio cholerae
Polymer Type:polypeptide(L)
Molecule:Type VI secretion protein
Chain IDs:B (auth: A), D (auth: B), F (auth: C), H (auth: D), J (auth: E), L (auth: F), T (auth: X), V (auth: Z), X (auth: c), Z (auth: e), BA (auth: g), DA (auth: i), LA (auth: Y), NA (auth: b), PA (auth: d), RA (auth: f), TA (auth: h), VA (auth: j)
Chain Length:473
Number of Molecules:18
Biological Source:Vibrio cholerae
Polymer Type:polypeptide(L)
Molecule:VipA
Chain IDs:M (auth: a), N (auth: G), O (auth: H), P (auth: I), Q (auth: J), R (auth: K), EA (auth: u), FA (auth: k), GA (auth: m), HA (auth: o), IA (auth: q), JA (auth: s), WA (auth: v), XA (auth: l), YA (auth: n), ZA (auth: p), AB (auth: r), BB (auth: t)
Chain Length:473
Number of Molecules:18
Biological Source:Vibrio cholerae
Ligand Molecules
Primary Citation
Cryo-EM structure of the extended type VI secretion system sheath-tube complex.
Nat Microbiol 2 1507 1512 (2017)
PMID: 28947741 DOI: 10.1038/s41564-017-0020-7

Abstact

The bacterial type VI secretion system (T6SS) uses contraction of a long sheath to quickly thrust a tube with associated effectors across membranes of eukaryotic and bacterial cells 1-5 . Only limited structural information is available about the inherently unstable precontraction state of the T6SS. Here, we obtain a 3.7 Å resolution structure of a non-contractile sheath-tube complex using cryo-electron microscopy and show that it resembles the extended T6SS inside Vibrio cholerae cells. We build a pseudo-atomic model of the complete sheath-tube assembly, which provides a mechanistic understanding of coupling sheath contraction with pushing and rotating the inner tube for efficient target membrane penetration. Our data further show that sheath contraction exposes a buried recognition domain to specifically trigger the disassembly and recycling of the T6SS sheath by the cognate ATP-dependent unfoldase ClpV.

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