5OGK image
Deposition Date 2017-07-13
Release Date 2017-11-22
Last Version Date 2024-01-17
Entry Detail
PDB ID:
5OGK
Title:
Crystal structure of a nucleotide sugar transporter with bound nucleotide sugar.
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.60 Å
R-Value Free:
0.31
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:GDP-mannose transporter 1
Gene (Uniprot):VRG4
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:337
Number of Molecules:8
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Primary Citation
Structural basis of nucleotide sugar transport across the Golgi membrane.
Nature 551 521 524 (2017)
PMID: 29143814 DOI: 10.1038/nature24464

Abstact

Glycosylation is a fundamental cellular process that, in eukaryotes, occurs in the lumen of both the Golgi apparatus and the endoplasmic reticulum. Nucleotide sugar transporters (NSTs) are an essential component of the glycosylation pathway, providing the diverse range of substrates required for the glycosyltransferases. NSTs are linked to several developmental and immune disorders in humans, and in pathogenic microbes they have an important role in virulence. How NSTs recognize and transport activated monosaccharides, however, is currently unclear. Here we present the crystal structure of an NST, the GDP-mannose transporter Vrg4, in both the substrate-free and the bound states. A hitherto unobserved requirement of short-chain lipids in activating the transporter supports a model for regulation within the highly dynamic membranes of the Golgi apparatus. Our results provide a structural basis for understanding nucleotide sugar recognition, and provide insights into the transport and regulatory mechanism of this family of intracellular transporters.

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