5O98 image
Deposition Date 2017-06-16
Release Date 2018-02-21
Last Version Date 2024-01-17
Entry Detail
PDB ID:
5O98
Keywords:
Title:
Binary complex of Catharanthus roseus Vitrosamine Synthase with NADP+
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.55 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Alcohol dehydrogenase 1
Chain IDs:A, B
Chain Length:317
Number of Molecules:2
Biological Source:Catharanthus roseus
Ligand Molecules
Primary Citation
Discovery of a Short-Chain Dehydrogenase from Catharanthus roseus that Produces a New Monoterpene Indole Alkaloid.
Chembiochem 19 940 948 (2018)
PMID: 29424954 DOI: 10.1002/cbic.201700621

Abstact

Plant monoterpene indole alkaloids, a large class of natural products, derive from the biosynthetic intermediate strictosidine aglycone. Strictosidine aglycone, which can exist as a variety of isomers, can be reduced to form numerous different structures. We have discovered a short-chain alcohol dehydrogenase (SDR) from plant producers of monoterpene indole alkaloids (Catharanthus roseus and Rauvolfia serpentina) that reduce strictosidine aglycone and produce an alkaloid that does not correspond to any previously reported compound. Here we report the structural characterization of this product, which we have named vitrosamine, as well as the crystal structure of the SDR. This discovery highlights the structural versatility of the strictosidine aglycone biosynthetic intermediate and expands the range of enzymatic reactions that SDRs can catalyse. This discovery further highlights how a sequence-based gene mining discovery approach in plants can reveal cryptic chemistry that would not be uncovered by classical natural product chemistry approaches.

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Primary Citation of related structures