5O5J image
Deposition Date 2017-06-02
Release Date 2017-07-12
Last Version Date 2024-05-15
Entry Detail
PDB ID:
5O5J
Keywords:
Title:
Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.45 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:16S rRNA
Chain IDs:A
Chain Length:1528
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Conserved domain protein
Gene (Uniprot):MSMEG_0945
Chain IDs:B
Chain Length:33
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S3
Gene (Uniprot):rpsC
Chain IDs:C
Chain Length:275
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S4
Gene (Uniprot):rpsD
Chain IDs:D
Chain Length:201
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S5
Gene (Uniprot):rpsE
Chain IDs:E
Chain Length:214
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S6
Chain IDs:F
Chain Length:96
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S7
Gene (Uniprot):rpsG
Chain IDs:G
Chain Length:156
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S8
Gene (Uniprot):rpsH
Chain IDs:H
Chain Length:132
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S9
Gene (Uniprot):rpsI
Chain IDs:I
Chain Length:150
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S10
Gene (Uniprot):rpsJ
Chain IDs:J
Chain Length:101
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S11
Gene (Uniprot):rpsK
Chain IDs:K
Chain Length:138
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S12
Gene (Uniprot):rpsL
Chain IDs:L
Chain Length:124
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S13
Gene (Uniprot):rpsM
Chain IDs:M
Chain Length:124
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S14 type Z
Gene (Uniprot):rpsZ
Chain IDs:N
Chain Length:61
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S15
Gene (Uniprot):rpsO
Chain IDs:O
Chain Length:89
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S16
Gene (Uniprot):rpsP
Chain IDs:P
Chain Length:156
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S17
Gene (Uniprot):rpsQ
Chain IDs:Q
Chain Length:98
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S18 2
Gene (Uniprot):rpsR2
Chain IDs:R
Chain Length:84
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S19
Gene (Uniprot):rpsS
Chain IDs:S
Chain Length:93
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S20
Gene (Uniprot):rpsT
Chain IDs:T
Chain Length:86
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S2
Gene (Uniprot):rpsB
Chain IDs:U (auth: V)
Chain Length:277
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Polymer Type:polyribonucleotide
Molecule:tRNA-Phe anticodon stem
Chain IDs:V (auth: W)
Chain Length:19
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Polymer Type:polyribonucleotide
Molecule:mRNA fragment
Chain IDs:W (auth: X)
Chain Length:6
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L31
Gene (Uniprot):rpmE
Chain IDs:X (auth: g)
Chain Length:156
Number of Molecules:1
Biological Source:Mycobacterium smegmatis str. MC2 155
Primary Citation
The Complete Structure of the Mycobacterium smegmatis 70S Ribosome.
Cell Rep 20 149 160 (2017)
PMID: 28683309 DOI: 10.1016/j.celrep.2017.06.029

Abstact

The ribosome carries out the synthesis of proteins in every living cell. It consequently represents a frontline target in anti-microbial therapy. Tuberculosis ranks among the leading causes of death worldwide, due in large part to the combination of difficult-to-treat latency and antibiotic resistance. Here, we present the 3.3-Å cryo-EM structure of the 70S ribosome of Mycobacterium smegmatis, a close relative to the human pathogen Mycobacterium tuberculosis. The structure reveals two additional ribosomal proteins and localizes them to the vicinity of drug-target sites in both the catalytic center and the decoding site of the ribosome. Furthermore, we visualized actinobacterium-specific rRNA and protein expansions that extensively remodel the ribosomal surface with implications for polysome organization. Our results provide a foundation for understanding the idiosyncrasies of mycobacterial translation and reveal atomic details of the structure that will facilitate the design of anti-tubercular therapeutics.

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