5O15 image
Entry Detail
PDB ID:
5O15
Keywords:
Title:
Crystal structure of bifunctional dehydratase-cyclase domain in ambruticin biosynthesis
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-05-18
Release Date:
2017-11-08
Method Details:
Experimental Method:
Resolution:
1.17 Å
R-Value Free:
0.15
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:AmbC
Chain IDs:A, B
Chain Length:311
Number of Molecules:2
Biological Source:Sorangium cellulosum
Ligand Molecules
Primary Citation
Insights into the Dual Activity of a Bifunctional Dehydratase-Cyclase Domain.
Angew. Chem. Int. Ed. Engl. 57 343 347 (2018)
PMID: 29084363 DOI: 10.1002/anie.201707774

Abstact

Oxygen-containing heterocycles are a common structural motif in polyketide natural products and contribute significantly to their biological activity. Here, we report structural and mechanistic investigations on AmbDH3, a polyketide synthase domain with dual activity as dehydratase (DH) and pyran-forming cyclase in ambruticin biosynthesis. AmbDH3 is similar to monofunctional DH domains, using H51 and D215 for dehydration. V173 was confirmed as a diagnostic residue for cyclization activity by a mutational study and enzymatic in vitro experiments. Similar motifs were observed in the seemingly monofunctional AmbDH2, which also shows an unexpected cyclase activity. Our results pave the way for mining of hidden cyclases in biosynthetic pathways. They also open interesting prospects for the generation of novel biocatalysts for chemoenzymatic synthesis and pyran-polyketides by combinatorial biosynthesis.

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