5O13 image
Deposition Date 2017-05-17
Release Date 2017-11-01
Last Version Date 2024-01-17
Entry Detail
PDB ID:
5O13
Keywords:
Title:
Crystal structure of PIM1 kinase in complex with small-molecule inhibitor
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.44 Å
R-Value Free:
0.21
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
P 65
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Serine/threonine-protein kinase pim-1
Gene (Uniprot):PIM1
Chain IDs:A
Chain Length:298
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSX A CYS modified residue
SEP A SER modified residue
Primary Citation
Structural analysis of PIM1 kinase complexes with ATP-competitive inhibitors.
Sci Rep 7 13399 13399 (2017)
PMID: 29042609 DOI: 10.1038/s41598-017-13557-z

Abstact

PIM1 is an oncogenic kinase overexpressed in a number of cancers where it correlates with poor prognosis. Several studies demonstrated that inhibition of PIM1 activity is an attractive strategy in fighting overexpressing cancers, while distinct structural features of ATP binding pocket make PIM1 an inviting target for the design of selective inhibitors. To facilitate development of specific PIM1 inhibitors, in this study we report three crystal structures of ATP-competitive inhibitors at the ATP binding pocket of PIM1. Two of the reported structures (CX-4945 and Ro-3306) explain the off-target effect on PIM1 of respectively casein kinase 2 and cyclin-dependent kinase 1 dedicated inhibitors. In turn, the structure with CX-6258 demonstrates a binding mode of a potent, selective inhibitor of PIM1, PIM2, PIM3 and Flt-3 kinases. The consequences of our findings for future inhibitor development are discussed.

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Primary Citation of related structures