5O0S image
Deposition Date 2017-05-16
Release Date 2017-08-09
Last Version Date 2024-01-17
Entry Detail
PDB ID:
5O0S
Keywords:
Title:
Crystal structure of txGH116 (beta-glucosidase from Thermoanaerobacterium xylolyticum) in complex with unreacted beta Cyclophellitol Cyclosulfate probe ME711
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.16 Å
R-Value Free:
0.16
R-Value Work:
0.13
R-Value Observed:
0.14
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glucosylceramidase
Gene (Uniprot):Thexy_2211
Chain IDs:A
Chain Length:787
Number of Molecules:1
Biological Source:Thermoanaerobacterium xylanolyticum LX-11
Primary Citation
1,6-Cyclophellitol Cyclosulfates: A New Class of Irreversible Glycosidase Inhibitor.
ACS Cent Sci 3 784 793 (2017)
PMID: 28776021 DOI: 10.1021/acscentsci.7b00214

Abstact

The essential biological roles played by glycosidases, coupled to the diverse therapeutic benefits of pharmacologically targeting these enzymes, provide considerable motivation for the development of new inhibitor classes. Cyclophellitol epoxides and aziridines are recently established covalent glycosidase inactivators. Inspired by the application of cyclic sulfates as electrophilic equivalents of epoxides in organic synthesis, we sought to test whether cyclophellitol cyclosulfates would similarly act as irreversible glycosidase inhibitors. Here we present the synthesis, conformational analysis, and application of novel 1,6-cyclophellitol cyclosulfates. We show that 1,6-epi-cyclophellitol cyclosulfate (α-cyclosulfate) is a rapidly reacting α-glucosidase inhibitor whose 4C1 chair conformation matches that adopted by α-glucosidase Michaelis complexes. The 1,6-cyclophellitol cyclosulfate (β-cyclosulfate) reacts more slowly, likely reflecting its conformational restrictions. Selective glycosidase inhibitors are invaluable as mechanistic probes and therapeutic agents, and we propose cyclophellitol cyclosulfates as a valuable new class of carbohydrate mimetics for application in these directions.

Legend

Protein

Chemical

Disease

Primary Citation of related structures