5NZ8 image
Entry Detail
PDB ID:
5NZ8
Keywords:
Title:
Clostridium thermocellum cellodextrin phosphorylase with cellotetraose and phosphate bound
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2017-05-12
Release Date:
2017-08-09
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cellodextrin phosphorylase
Chain IDs:A, B
Chain Length:1009
Number of Molecules:2
Biological Source:Clostridium thermocellum
Ligand Molecules
Peptide-like Molecules
PRD_900011
Primary Citation
Cellodextrin phosphorylase from Ruminiclostridium thermocellum: X-ray crystal structure and substrate specificity analysis.
Carbohydr. Res. 451 118 132 (2017)
PMID: 28760417 DOI: 10.1016/j.carres.2017.07.005

Abstact

The GH94 glycoside hydrolase cellodextrin phosphorylase (CDP, EC 2.4.1.49) produces cellodextrin oligomers from short β-1→4-glucans and α-D-glucose 1-phosphate. Compared to cellobiose phosphorylase (CBP), which produces cellobiose from glucose and α-D-glucose 1-phosphate, CDP is biochemically less well characterised. Herein, we investigate the donor and acceptor substrate specificity of recombinant CDP from Ruminiclostridium thermocellum and we isolate and characterise a glucosamine addition product to the cellobiose acceptor with the non-natural donor α-D-glucosamine 1-phosphate. In addition, we report the first X-ray crystal structure of CDP, along with comparison to the available structures from CBPs and other closely related enzymes, which contributes to understanding of the key structural features necessary to discriminate between monosaccharide (CBP) and oligosaccharide (CDP) acceptor substrates.

Legend

Protein

Chemical

Disease

Primary Citation of related structures