5NYM image
Entry Detail
PDB ID:
5NYM
Keywords:
Title:
Crystal structure of the atypical poplar thioredoxin-like2.1 in reduced state
Biological Source:
PDB Version:
Deposition Date:
2017-05-11
Release Date:
2018-02-28
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Thioredoxin-like protein 2.1
Chain IDs:A
Chain Length:122
Number of Molecules:1
Biological Source:Populus tremula x Populus tremuloides
Primary Citation
Structural snapshots along the reaction mechanism of the atypical poplar thioredoxin-like2.1.
FEBS Lett. 592 1030 1041 (2018)
PMID: 29453875 DOI: 10.1002/1873-3468.13009

Abstact

Plastidial thioredoxin (TRX)-like2.1 proteins are atypical thioredoxins possessing a WCRKC active site signature and using glutathione for recycling. To obtain structural information supporting the peculiar catalytic mechanisms and target proteins of these TRXs, we solved the crystal structures of poplar TRX-like2.1 in oxidized and reduced states and of mutated variants. These structures share similar folding with TRXs exhibiting the canonical WCGPC signature. Moreover, the overall conformation is not altered by reduction of the catalytic disulfide bond or in a C45S/C67S variant that formed a disulfide-bridged dimer possibly mimicking reaction intermediates with target proteins. Modeling of the interaction of TRX-like2.1 with both NADPH- and ferredoxin-thioredoxin reductases (FTR) indicates that the presence of Arg43 and Lys44 residues likely precludes reduction by the plastidial FTR.

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