5NVS image
Deposition Date 2017-05-04
Release Date 2017-06-28
Last Version Date 2024-07-10
Entry Detail
PDB ID:
5NVS
Keywords:
Title:
Human cytoplasmic dynein-1 tail in the twisted N-terminus state
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
8.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:N-terminal dimerization domain
Chain IDs:H (auth: 1)
Chain Length:124
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:N-terminal dimerization domain
Chain IDs:G (auth: 2)
Chain Length:125
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:dynein heavy chain
Chain IDs:A
Chain Length:932
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:dynein heavy chain
Chain IDs:D (auth: B)
Chain Length:893
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:dynein intermediate chain
Chain IDs:B (auth: D), C
Chain Length:350
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:dynein light intermediate chain
Chain IDs:F (auth: E)
Chain Length:295
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:dynein light intermediate chain
Chain IDs:E (auth: F)
Chain Length:298
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:LC8
Chain IDs:I, J
Chain Length:85
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Tctex
Chain IDs:K
Chain Length:103
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Tctex
Chain IDs:L
Chain Length:104
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:intermediate chain
Chain IDs:M
Chain Length:27
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:intermediate chain
Chain IDs:N
Chain Length:29
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Robl
Chain IDs:O (auth: R), P (auth: S)
Chain Length:120
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Cryo-EM Reveals How Human Cytoplasmic Dynein Is Auto-inhibited and Activated.
Cell 169 1303 1314.e18 (2017)
PMID: 28602352 DOI: 10.1016/j.cell.2017.05.025

Abstact

Cytoplasmic dynein-1 binds dynactin and cargo adaptor proteins to form a transport machine capable of long-distance processive movement along microtubules. However, it is unclear why dynein-1 moves poorly on its own or how it is activated by dynactin. Here, we present a cryoelectron microscopy structure of the complete 1.4-megadalton human dynein-1 complex in an inhibited state known as the phi-particle. We reveal the 3D structure of the cargo binding dynein tail and show how self-dimerization of the motor domains locks them in a conformation with low microtubule affinity. Disrupting motor dimerization with structure-based mutagenesis drives dynein-1 into an open form with higher affinity for both microtubules and dynactin. We find the open form is also inhibited for movement and that dynactin relieves this by reorienting the motor domains to interact correctly with microtubules. Our model explains how dynactin binding to the dynein-1 tail directly stimulates its motor activity.

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Primary Citation of related structures