5NUQ image
Deposition Date 2017-05-01
Release Date 2017-10-25
Last Version Date 2024-01-17
Entry Detail
PDB ID:
5NUQ
Title:
Structural basis for maintenance of bacterial outer membrane lipid asymmetry
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.30
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein F
Gene (Uniprot):ompF
Chain IDs:A, B, C, D, E, F
Chain Length:340
Number of Molecules:6
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Molecule:Probable phospholipid-binding lipoprotein mlaA
Chain IDs:G, H
Chain Length:235
Number of Molecules:2
Biological Source:Serratia marcescens
Ligand Molecules
Primary Citation
Structural basis for maintenance of bacterial outer membrane lipid asymmetry.
Nat Microbiol 2 1616 1623 (2017)
PMID: 29038444 DOI: 10.1038/s41564-017-0046-x

Abstact

The Gram-negative bacterial outer membrane (OM) is a unique bilayer that forms an efficient permeation barrier to protect the cell from noxious compounds 1,2 . The defining characteristic of the OM is lipid asymmetry, with phospholipids comprising the inner leaflet and lipopolysaccharides comprising the outer leaflet 1-3 . This asymmetry is maintained by the Mla pathway, a six-component system that is widespread in Gram-negative bacteria and is thought to mediate retrograde transport of misplaced phospholipids from the outer leaflet of the OM to the cytoplasmic membrane 4 . The OM lipoprotein MlaA performs the first step in this process via an unknown mechanism that does not require external energy input. Here we show, using X-ray crystallography, molecular dynamics simulations and in vitro and in vivo functional assays, that MlaA is a monomeric α-helical OM protein that functions as a phospholipid translocation channel, forming a ~20-Å-thick doughnut embedded in the inner leaflet of the OM with a central, amphipathic pore. This architecture prevents access of inner leaflet phospholipids to the pore, but allows outer leaflet phospholipids to bind to a pronounced ridge surrounding the channel, followed by diffusion towards the periplasmic space. Enterobacterial MlaA proteins form stable complexes with OmpF/C 5,6 , but the porins do not appear to play an active role in phospholipid transport. MlaA represents a lipid transport protein that selectively removes outer leaflet phospholipids to help maintain the essential barrier function of the bacterial OM.

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Primary Citation of related structures
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