5NS7 image
Deposition Date 2017-04-25
Release Date 2018-08-08
Last Version Date 2024-05-08
Entry Detail
PDB ID:
5NS7
Keywords:
Title:
Crystal structure of beta-glucosidase BglM-G1 mutant H75R from marine metagenome
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.54 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 43
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:beta-glucosidase M - G1
Mutations:H75R
Chain IDs:A, B, C
Chain Length:454
Number of Molecules:3
Biological Source:marine metagenome
Primary Citation
Loss of a conserved salt bridge in bacterial glycosyl hydrolase BgIM-G1 improves substrate binding in temperate environments.
Commun Biol 1 171 171 (2018)
PMID: 30345395 DOI: 10.1038/s42003-018-0167-7

Abstact

Salt bridges are the strongest electrostatic interactions in proteins. They substantially contribute to a protein's structural stability. Thus, mutations of salt bridges are typically selected against. Here, we report on the evolutionary loss of a highly conserved salt bridge in the GH1 family glycosyl hydrolase BglM-G1. BglM-G1's gene was found in the bacterial metagenome of a temperate, seasonally cold marine habitat. In BglM-G1, arginine 75 is replaced by a histidine. While fully retaining β-glucosidase activity, BglM-G1 is less heat stable than an H75R variant, in which the salt bridge was artificially re-introduced. However, the K m toward its substrates was lower in wild type, leading to an overall higher catalytic efficiency. Our results indicate that this loss of the salt bridge leads to higher flexibility in BglM-G1's active site, trading structural stability at high temperatures, a trait not needed in a temperate, seasonally cold habitat, for a more effective catalytic activity.

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