5NQN image
Deposition Date 2017-04-20
Release Date 2017-05-31
Last Version Date 2024-01-17
Entry Detail
PDB ID:
5NQN
Title:
CU(I)-CSP3 (COPPER STORAGE PROTEIN 3) FROM METHYLOSINUS
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.62 Å
R-Value Free:
0.21
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
C 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:CSP3
Gene (Uniprot):CQW49_17190
Chain IDs:A
Chain Length:133
Number of Molecules:1
Biological Source:Methylosinus trichosporium OB3b
Primary Citation
Visualizing Biological Copper Storage: The Importance of Thiolate-Coordinated Tetranuclear Clusters.
Angew. Chem. Int. Ed. Engl. 56 8697 8700 (2017)
PMID: 28504850 DOI: 10.1002/anie.201703107

Abstact

Bacteria possess cytosolic proteins (Csp3s) capable of binding large quantities of copper and preventing toxicity. Crystal structures of a Csp3 plus increasing amounts of CuI provide atomic-level information about how a storage protein loads with metal ions. Many more sites are occupied than CuI equiv added, with binding by twelve central sites dominating. These can form [Cu4 (S-Cys)4 ] intermediates leading to [Cu4 (S-Cys)5 ]- , [Cu4 (S-Cys)6 ]2- , and [Cu4 (S-Cys)5 (O-Asn)]- clusters. Construction of the five CuI sites at the opening of the bundle lags behind the main core, and the two least accessible sites at the opposite end of the bundle are occupied last. Facile CuI cluster formation, reminiscent of that for inorganic complexes with organothiolate ligands, is largely avoided in biology but is used by proteins that store copper in the cytosol of prokaryotes and eukaryotes, where this reactivity is also key to toxicity.

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Primary Citation of related structures