5NPS image
Deposition Date 2017-04-18
Release Date 2018-05-16
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5NPS
Keywords:
Title:
The human O-GlcNAc transferase in complex with a bisubstrate inhibitor
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.68 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
F 2 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit
Gene (Uniprot):OGT
Chain IDs:A
Chain Length:718
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:5,6-DIHYDRO-BENZO[H]CINNOLIN-3-YLAMINE
Chain IDs:B (auth: D)
Chain Length:9
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Thio-Linked UDP-Peptide Conjugates as O-GlcNAc Transferase Inhibitors.
Bioconjug. Chem. 29 1834 1840 (2018)
PMID: 29723473 DOI: 10.1021/acs.bioconjchem.8b00194

Abstact

O-GlcNAc transferase (OGT) is an essential glycosyltransferase that installs the O-GlcNAc post-translational modification on the nucleocytoplasmic proteome. We report the development of S-linked UDP-peptide conjugates as potent bisubstrate OGT inhibitors. These compounds were assembled in a modular fashion by photoinitiated thiol-ene conjugation of allyl-UDP and optimal acceptor peptides in which the acceptor serine was replaced with cysteine. The conjugate VTPVC(S-propyl-UDP)TA (Ki = 1.3 μM) inhibits the OGT activity in HeLa cell lysates. Linear fusions of this conjugate with cell penetrating peptides were explored as prototypes of cell-penetrant OGT inhibitors. A crystal structure of human OGT with the inhibitor revealed mimicry of the interactions seen in the pseudo-Michaelis complex. Furthermore, a fluorophore-tagged derivative of the inhibitor works as a high affinity probe in a fluorescence polarimetry hOGT assay.

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Disease

Primary Citation of related structures