5NOB image
Deposition Date 2017-04-11
Release Date 2017-11-29
Last Version Date 2024-01-17
Entry Detail
PDB ID:
5NOB
Keywords:
Title:
Crystal structure of human tankyrase 2 in complex with OD336
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tankyrase-2
Gene (Uniprot):TNKS2
Chain IDs:A, B
Chain Length:240
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Discovery of a Novel Series of Tankyrase Inhibitors by a Hybridization Approach.
J. Med. Chem. 60 10013 10025 (2017)
PMID: 29155568 DOI: 10.1021/acs.jmedchem.7b00883

Abstact

A structure-guided hybridization approach using two privileged substructures gave instant access to a new series of tankyrase inhibitors. The identified inhibitor 16 displays high target affinity on tankyrase 1 and 2 with biochemical and cellular IC50 values of 29 nM, 6.3 nM and 19 nM, respectively, and high selectivity toward other poly (ADP-ribose) polymerase enzymes. The identified inhibitor shows a favorable in vitro ADME profile as well as good oral bioavailability in mice, rats, and dogs. Critical for the approach was the utilization of an appropriate linker between 1,2,4-triazole and benzimidazolone moieties, whereby a cyclobutyl linker displayed superior affinity compared to a cyclohexane and phenyl linker.

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Primary Citation of related structures