5NMT image
Deposition Date 2017-04-07
Release Date 2017-11-29
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5NMT
Title:
Dimer structure of Sortilin ectodomain crystal form 1, 2.3A
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Sortilin
Gene (Uniprot):Sort1
Chain IDs:A, B
Chain Length:731
Number of Molecules:2
Biological Source:Mus musculus
Primary Citation
Low pH-induced conformational change and dimerization of sortilin triggers endocytosed ligand release.
Nat Commun 8 1708 1708 (2017)
PMID: 29167428 DOI: 10.1038/s41467-017-01485-5

Abstact

Low pH-induced ligand release and receptor recycling are important steps for endocytosis. The transmembrane protein sortilin, a β-propeller containing endocytosis receptor, internalizes a diverse set of ligands with roles in cell differentiation and homeostasis. The molecular mechanisms of pH-mediated ligand release and sortilin recycling are unresolved. Here we present crystal structures that show the sortilin luminal segment (s-sortilin) undergoes a conformational change and dimerizes at low pH. The conformational change, within all three sortilin luminal domains, provides an altered surface and the dimers sterically shield a large interface while bringing the two s-sortilin C-termini into close proximity. Biophysical and cell-based assays show that members of two different ligand families, (pro)neurotrophins and neurotensin, preferentially bind the sortilin monomer. This indicates that sortilin dimerization and conformational change discharges ligands and triggers recycling. More generally, this work may reveal a double mechanism for low pH-induced ligand release by endocytosis receptors.

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