5NMI image
Entry Detail
PDB ID:
5NMI
Title:
Cytochrome bc1 bound to the inhibitor MJM170
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2017-04-05
Release Date:
2017-06-14
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.26
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 65
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 1, mitochondrial
Chain IDs:A, L (auth: N)
Chain Length:444
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 2, mitochondrial
Chain IDs:B, M (auth: O)
Chain Length:423
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Cytochrome b
Chain IDs:C, N (auth: P)
Chain Length:372
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Cytochrome c1, heme protein, mitochondrial
Chain IDs:D, O (auth: Q)
Chain Length:240
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit Rieske, mitochondrial
Chain IDs:E, I, P (auth: R), T (auth: V)
Chain Length:274
Number of Molecules:4
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 7
Chain IDs:F, Q (auth: S)
Chain Length:111
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 8
Chain IDs:G, R (auth: T)
Chain Length:82
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 6, mitochondrial
Chain IDs:H, S (auth: U)
Chain Length:91
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Cytochrome b-c1 complex subunit 9
Chain IDs:J, U (auth: W)
Chain Length:64
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:ARG-ASN-TRP-VAL-PRO-THR-ALA-GLN-LEU-TRP-GLY-ALA-VAL-GLY-ALA-VAL-GLY-LEU-VAL-SER-ALA-THR
Chain IDs:K, V (auth: X)
Chain Length:22
Number of Molecules:2
Biological Source:Bos taurus
Primary Citation

Abstact

Toxoplasma gondii, the most common parasitic infection of human brain and eye, persists across lifetimes, can progressively damage sight, and is currently incurable. New, curative medicines are needed urgently. Herein, we develop novel models to facilitate drug development: EGS strain T. gondii forms cysts in vitro that induce oocysts in cats, the gold standard criterion for cysts. These cysts highly express cytochrome b. Using these models, we envisioned, and then created, novel 4-(1H)-quinolone scaffolds that target the cytochrome bc1 complex Qi site, of which, a substituted 5,6,7,8-tetrahydroquinolin-4-one inhibits active infection (IC50, 30 nM) and cysts (IC50, 4 μM) in vitro, and in vivo (25 mg/kg), and drug resistant Plasmodium falciparum (IC50, <30 nM), with clinically relevant synergy. Mutant yeast and co-crystallographic studies demonstrate binding to the bc1 complex Qi site. Our results have direct impact on improving outcomes for those with toxoplasmosis, malaria, and ~2 billion persons chronically infected with encysted bradyzoites.

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Primary Citation of related structures