5NIK image
Deposition Date 2017-03-24
Release Date 2017-05-24
Last Version Date 2024-05-15
Entry Detail
PDB ID:
5NIK
Title:
Structure of the MacAB-TolC ABC-type tripartite multidrug efflux pump
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein TolC
Gene (Uniprot):tolC
Chain IDs:A, B, C
Chain Length:479
Number of Molecules:3
Biological Source:Escherichia coli (strain K12)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Macrolide export protein MacA
Gene (Uniprot):macA
Chain IDs:D, E, F, G, H, I
Chain Length:371
Number of Molecules:6
Biological Source:Escherichia coli (strain K12)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Macrolide export ATP-binding/permease protein MacB
Gene (Uniprot):macB
Chain IDs:J, K
Chain Length:654
Number of Molecules:2
Biological Source:Escherichia coli (strain K12)
Ligand Molecules
Primary Citation
Structure of the MacAB-TolC ABC-type tripartite multidrug efflux pump.
Nat Microbiol 2 17070 17070 (2017)
PMID: 28504659 DOI: 10.1038/nmicrobiol.2017.70

Abstact

The MacA-MacB-TolC assembly of Escherichia coli is a transmembrane machine that spans the cell envelope and actively extrudes substrates, including macrolide antibiotics and polypeptide virulence factors. These transport processes are energized by the ATPase MacB, a member of the ATP-binding cassette (ABC) superfamily. We present an electron cryo-microscopy structure of the ABC-type tripartite assembly at near-atomic resolution. A hexamer of the periplasmic protein MacA bridges between a TolC trimer in the outer membrane and a MacB dimer in the inner membrane, generating a quaternary structure with a central channel for substrate translocation. A gating ring found in MacA is proposed to act as a one-way valve in substrate transport. The MacB structure features an atypical transmembrane domain with a closely packed dimer interface and a periplasmic opening that is the likely portal for substrate entry from the periplasm, with subsequent displacement through an allosteric transport mechanism.

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Primary Citation of related structures
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