5NHT image
Deposition Date 2017-03-22
Release Date 2018-05-16
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5NHT
Keywords:
IMMUNE SYSTEM
Title:
human 199.54-16 TCR in complex with Melan-A/MART-1 (26-35) peptide and HLA-A2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
3.20 Å
R-Value Free:
0.29
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
5NHT validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:T-cell receptor alpha variable 12-2,T-cell receptor, sp3.4 alpha chain
Gene (Uniprot):TRAV12-2
Mutations:T158C,T158C
Chain IDs:D (auth: A)
Chain Length:211
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:K7N5N2,A0A075B6T6 Pfam ID:PF07686, PF09291
Protein Blast
Polymer Type:polypeptide(L)
Molecule:T-cell receptor beta variable 19,TRB protein
Gene (Uniprot):TRB, TRBV19
Mutations:S171C,S171C,S171C,S171C,S171C,S171C,S171C,S171C,S171C,S171C,S171C,S171C,S171C,S171C,S171C,S171C
Chain IDs:E (auth: B)
Chain Length:251
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:A0A5B3,A0A0C4ZKA8 Pfam ID:PF07686, PF07654
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HLA class I histocompatibility antigen, A-2 alpha chain
Mutations:A245V
Chain IDs:A (auth: H)
Chain Length:276
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P04439 Pfam ID:PF00129, PF07654
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:B (auth: L)
Chain Length:100
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P61769 Pfam ID:PF07654
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Melanoma antigen recognized by T-cells 1
Mutations:A27L
Chain IDs:C (auth: P)
Chain Length:10
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q16655
Ligand Molecules
CL
K
SCN
Primary Citation
human 199.54-16 TCR in complex with Melan-A/MART-1 (26-35) peptide and HLA-A2
To Be Published ? ? ? (?)
Primary Citation of related structures
5NHT