5NGW image
Deposition Date 2017-03-20
Release Date 2018-01-31
Last Version Date 2024-01-17
Entry Detail
PDB ID:
5NGW
Keywords:
Title:
Glycoside hydrolase-like protein
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.21
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:OpGH99A
Chain IDs:A
Chain Length:389
Number of Molecules:1
Biological Source:Flavobacteriaceae bacterium S85
Ligand Molecules
Primary Citation
Crystal structure of a marine glycoside hydrolase family 99-related protein lacking catalytic machinery.
Protein Sci. 26 2445 2450 (2017)
PMID: 28884852 DOI: 10.1002/pro.3291

Abstact

Algal polysaccharides of diverse structures are one of the most abundant carbon resources for heterotrophic, marine bacteria with coevolved digestive enzymes. A putative sulfo-mannan polysaccharide utilization locus, which is conserved in marine flavobacteria, contains an unusual GH99-like protein that lacks the conserved catalytic residues of glycoside hydrolase family 99. Using X-ray crystallography, we structurally characterized this protein from the marine flavobacterium Ochrovirga pacifica to help elucidate its molecular function. The structure reveals the absence of potential catalytic residues for polysaccharide hydrolysis, which-together with additional structural features-suggests this protein may be noncatalytic and involved in carbohydrate binding.

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Primary Citation of related structures