5NGN image
Deposition Date 2017-03-18
Release Date 2017-07-26
Last Version Date 2024-10-16
Entry Detail
PDB ID:
5NGN
Keywords:
Title:
Lybatide 2, a cystine-rich peptide from Lycium barbarum
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.48 Å
R-Value Free:
0.13
R-Value Work:
0.10
R-Value Observed:
0.10
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:lybatide 2
Chain IDs:A, B, C
Chain Length:33
Number of Molecules:3
Biological Source:Lycium barbarum
Primary Citation
Lybatides from Lycium barbarum Contain An Unusual Cystine-stapled Helical Peptide Scaffold.
Sci Rep 7 5194 5194 (2017)
PMID: 28701689 DOI: 10.1038/s41598-017-05037-1

Abstact

Cysteine-rich peptides (CRPs) of 2-6 kDa are generally thermally and proteolytically stable because of their multiple cross-bracing disulfide bonds. Here, we report the discovery and characterization of two novel cystine-stapled CRPs, designated lybatide 1 and 2 (lyba1 and lyba2), from the cortex of Lycium barbarum root. Lybatides, 32 to 33 amino acids in length, are hyperstable and display a novel disulfide connectivity with a cysteine motif of C-C-C-C-CC-CC which contains two pairs of adjacent cysteines (-CC-CC). X-ray structure analysis revealed the presence of a single cystine-stabilized (α + π)-helix in lyba2, a rare feature of CRPs. Together, our results suggest that lybatides, one of the smallest four-disulfide-constrained plant CRPs, is a new family of CRPs. Additionally, this study provides new insights into the molecular diversity of plant cysteine-rich peptides and the unusual lybatide scaffold could be developed as a useful template for peptide engineering and therapeutic development.

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