ISDA

Deposition Date 2017-03-14

Release Date 2018-03-14

Last Version Date 2024-11-20

Entry Detail

PDB ID:

5NFO

Keywords:

OXIDOREDUCTASE

Title:

Human JMJD7 in complex with Mn and 2OG in the P21212 form

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.17 Å

R-Value Free:

0.18

R-Value Work:

0.17

R-Value Observed:

0.17

Space Group:

P 21 21 2

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:JmjC domain-containing protein 7
Gene (Uniprot):JMJD7
Mutations:R260C
Chain IDs:A, B
Chain Length:335
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P0C870 Pfam ID:PF13621 EC:1.14.11.27

Ligand Molecules

AKG

GOL

NO3

Primary Citation

(3S)-Lysyl hydroxylation of TRAFAC GTPases is catalyzed by the human Jumonji-C oxygenase JMJD7.

Markolovic, S, Zhuang, Q, Wilkins, S.E, Eaton, C, Katz, M.J, Smith, H.E, Lesniak, R.K, Hall, C, Struwe, W.B, Konietzny, R, Davis, S, Yang, M, Ge, W, Benesch, J.L, Kessler, B.M, Ratcliffe, P.J, Cockman, M.E, Fischer, R, Wappner, P, Chowdhury, R, Coleman, M.L, Schofield, C.J.Show

To Be Published ? ? ? (?)

Primary Citation of related structures