5NF9 image
Entry Detail
PDB ID:
5NF9
Title:
Structure of Galectin-3 CRD in complex with compound 2
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2017-03-13
Release Date:
2017-06-21
Method Details:
Experimental Method:
Resolution:
1.87 Å
R-Value Free:
0.21
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Galectin-3
Chain IDs:A
Chain Length:147
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Biophysical and structural characterization of mono/di-arylated lactosamine derivatives interaction with human galectin-3.
Biochem. Biophys. Res. Commun. 489 281 286 (2017)
PMID: 28554839 DOI: 10.1016/j.bbrc.2017.05.150

Abstact

Combination of biophysical and structural techniques allowed characterizing and uncovering the mechanisms underlying increased binding affinity of lactosamine derivatives for galectin 3. In particular, complementing information gathered from X-ray crystallography, native mass spectrometry and isothermal microcalorimetry showed favorable enthalpic contribution of cation-π interaction between lactosamine aryl substitutions and arginine residues from the carbohydrate recognition domain, which resulted in two log increase in compound binding affinity. This incrementing strategy allowed individual contribution of galectin inhibitor moieties to be dissected. Altogether, our results suggest that core and substituents of these saccharide-based inhibitors can be optimized separately, providing valuable tools to study the role of galectins in diseases.

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Primary Citation of related structures