5NEJ image
Entry Detail
PDB ID:
5NEJ
EMDB ID:
Keywords:
Title:
CryoEM Structure of Foot and Mouth Disease Virus O1 Manisa
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2017-03-10
Release Date:
2017-06-21
Method Details:
Experimental Method:
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:O1 Manisa VP1
Chain IDs:A (auth: 1)
Chain Length:211
Number of Molecules:1
Biological Source:Foot-and-mouth disease virus
Polymer Type:polypeptide(L)
Description:O1 Manisa VP2
Mutations:S93Y
Chain IDs:B (auth: 2)
Chain Length:218
Number of Molecules:1
Biological Source:Foot-and-mouth disease virus
Polymer Type:polypeptide(L)
Description:O1 Manisa VP3
Chain IDs:C (auth: 3)
Chain Length:220
Number of Molecules:1
Biological Source:Foot-and-mouth disease virus
Polymer Type:polypeptide(L)
Description:O1 Manisa VP1
Chain IDs:D (auth: 4)
Chain Length:85
Number of Molecules:1
Biological Source:Foot-and-mouth disease virus
Ligand Molecules
Primary Citation
Rules of engagement between alpha v beta 6 integrin and foot-and-mouth disease virus.
Nat Commun 8 15408 15408 (2017)
PMID: 28534487 DOI: 10.1038/ncomms15408

Abstact

Foot-and-mouth disease virus (FMDV) mediates cell entry by attachment to an integrin receptor, generally αvβ6, via a conserved arginine-glycine-aspartic acid (RGD) motif in the exposed, antigenic, GH loop of capsid protein VP1. Infection can also occur in tissue culture adapted virus in the absence of integrin via acquired basic mutations interacting with heparin sulphate (HS); this virus is attenuated in natural infections. HS interaction has been visualized at a conserved site in two serotypes suggesting a propensity for sulfated-sugar binding. Here we determined the interaction between αvβ6 and two tissue culture adapted FMDV strains by cryo-electron microscopy. In the preferred mode of engagement, the fully open form of the integrin, hitherto unseen at high resolution, attaches to an extended GH loop via interactions with the RGD motif plus downstream hydrophobic residues. In addition, an N-linked sugar of the integrin attaches to the previously identified HS binding site, suggesting a functional role.

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Primary Citation of related structures